Variant report

Variant	rs6468610
Chromosome Location	chr8:88004021-88004022
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10955130	0.92[EUR][1000 genomes]
rs13253498	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13262224	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28512235	1.00[AFR][1000 genomes]
rs2934948	1.00[AFR][1000 genomes]
rs4279611	0.81[EUR][1000 genomes]
rs4960932	0.92[EUR][1000 genomes]
rs4961004	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6415426	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6468558	0.85[EUR][1000 genomes]
rs6468571	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6468611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986314	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7002729	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7003658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825717	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7825908	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7826182	0.89[EUR][1000 genomes]
rs7829765	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7835840	0.85[EUR][1000 genomes]
rs7841642	0.89[EUR][1000 genomes]
rs7845923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9774553	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3414235	chr8:87963885-88009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3369426	chr8:88003962-88004550	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88001600-88006000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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