Variant report

Variant	rs4279611
Chromosome Location	chr8:87901040-87901041
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10955130	0.89[EUR][1000 genomes]
rs13253498	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13262224	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4604452	0.88[AMR][1000 genomes]
rs4644279	0.88[AMR][1000 genomes]
rs4960932	0.82[EUR][1000 genomes]
rs4961004	0.82[EUR][1000 genomes]
rs6415426	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6468558	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6468571	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6468610	0.81[EUR][1000 genomes]
rs6468611	0.81[EUR][1000 genomes]
rs7002729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003658	0.81[EUR][1000 genomes]
rs7825717	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825908	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7826182	0.85[EUR][1000 genomes]
rs7829765	0.85[EUR][1000 genomes]
rs7835840	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7841642	0.85[EUR][1000 genomes]
rs7845923	0.81[EUR][1000 genomes]
rs9774553	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv891158	chr8:87791641-87956609	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87899400-87901400	Enhancers	Adipose Nuclei	Adipose
2	chr8:87900800-87901400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:87900800-87901400	Active TSS	Brain Substantia Nigra	brain
4	chr8:87901000-87901200	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr8:87901000-87901400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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