Variant report

Variant	rs9774553
Chromosome Location	chr8:87971016-87971017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10955130	0.94[EUR][1000 genomes]
rs13253498	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13262224	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4279611	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4960932	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4961004	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6415426	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468558	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6468571	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6468610	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6468611	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6986314	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7002729	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7003658	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7825717	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7825908	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7826182	0.91[EUR][1000 genomes]
rs7829765	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7835840	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7841642	0.91[EUR][1000 genomes]
rs7845923	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3395182	chr8:87963885-87993322	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3414235	chr8:87963885-88009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87965200-87972000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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