Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:69535028..69537721-chr8:69610175..69612490,2	MCF-7	breast:
2	chr8:69609836..69613809-chr8:69614366..69618965,6	MCF-7	breast:
3	chr8:69532014..69534673-chr8:69610111..69611773,2	MCF-7	breast:
4	chr8:69603997..69607183-chr8:69609527..69612798,4	MCF-7	breast:
5	chr8:69609765..69614722-chr8:69616148..69622047,8	MCF-7	breast:
6	chr8:69604610..69607448-chr8:69608614..69611000,3	MCF-7	breast:
7	chr8:69607693..69609742-chr8:69610232..69613117,3	MCF-7	breast:
8	chr8:69610109..69611975-chr8:69765057..69767019,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000239184	Chromatin interaction
ENSG00000165084	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10113102	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1116986	0.80[ASN][1000 genomes]
rs11781537	0.82[ASN][1000 genomes]
rs11781575	0.80[ASN][1000 genomes]
rs12543018	0.97[ASN][1000 genomes]
rs12675138	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12681467	0.82[ASN][1000 genomes]
rs13255506	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13262989	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13267479	1.00[ASN][1000 genomes]
rs13275978	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13278185	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16919105	0.82[ASN][1000 genomes]
rs2082723	0.80[ASN][1000 genomes]
rs62520966	0.82[ASN][1000 genomes]
rs6651315	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982315	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7016101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7464474	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs766871	0.80[ASN][1000 genomes]
rs7812470	0.80[ASN][1000 genomes]
rs7836513	0.97[ASN][1000 genomes]
rs959451	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69609800-69611000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr8:69609800-69612800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:69609800-69613000	Enhancers	Colon Smooth Muscle	Colon
4	chr8:69610000-69610600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:69610000-69612200	Enhancers	Fetal Stomach	stomach
6	chr8:69610000-69613000	Enhancers	Rectal Smooth Muscle	rectum
7	chr8:69610200-69611000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:69610200-69612400	Enhancers	Duodenum Smooth Muscle	Duodenum

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