Variant report

Variant	rs12675138
Chromosome Location	chr8:69601664-69601665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59092478..59095323-chr8:69601494..69603790,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10101569	0.93[ASN][1000 genomes]
rs10113102	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10957442	0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs10957444	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10957445	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1116986	0.90[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs11780828	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11781537	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11781575	0.90[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs12543018	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs12681248	0.93[ASN][1000 genomes]
rs12681467	0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13254893	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13255506	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13262989	0.90[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13263978	0.95[CHB][hapmap]
rs13267479	0.90[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs13275978	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13278185	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1434935	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs1434936	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1434937	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1434938	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs16919105	0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1865440	0.85[ASN][1000 genomes]
rs1865441	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs1865443	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1897906	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs2082723	0.90[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs2196255	0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2196256	0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs2196257	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2890437	0.84[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs62520966	0.96[ASN][1000 genomes]
rs6472417	0.90[CHB][hapmap]
rs6651315	0.92[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6982247	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs6982315	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982710	0.80[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7007623	0.81[ASN][1000 genomes]
rs7016101	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7464474	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs766871	0.90[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7812470	0.94[ASN][1000 genomes]
rs7835401	0.90[CHB][hapmap]
rs7836513	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs959451	0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs961465	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs9643596	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs968826	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69600800-69601800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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