Variant report

Variant	rs13263978
Chromosome Location	chr8:69598466-69598467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10101569	0.93[ASN][1000 genomes]
rs10113102	0.85[ASN][1000 genomes]
rs10957442	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10957444	0.91[CHB][hapmap];0.96[JPT][hapmap]
rs10957445	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1116986	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11780828	0.89[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs11781537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11781575	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12543018	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12675138	0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681248	0.93[ASN][1000 genomes]
rs12681467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13254893	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13255506	0.85[ASN][1000 genomes]
rs13262989	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13267479	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13275978	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13278185	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1434935	0.95[CHB][hapmap];0.96[JPT][hapmap]
rs1434936	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1434937	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1434938	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs16919105	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16934837	0.89[CEU][hapmap]
rs1865440	0.85[ASN][1000 genomes]
rs1865441	0.82[JPT][hapmap]
rs1865443	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1897906	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2082723	0.91[CHB][hapmap];0.96[JPT][hapmap];0.94[ASN][1000 genomes]
rs2196255	0.89[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2196256	0.89[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2196257	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2890437	0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs62520966	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6472417	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs6651315	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6982247	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6982315	1.00[CHB][hapmap];0.96[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982710	0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7007623	0.81[ASN][1000 genomes]
rs7016101	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7464474	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs766871	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7812470	0.94[ASN][1000 genomes]
rs7835401	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7836513	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs959451	1.00[CHB][hapmap];0.96[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs961465	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9643596	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs968826	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links