Variant report

Variant	rs16934837
Chromosome Location	chr8:69562029-69562030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11780358	0.80[CEU][hapmap];0.82[CHB][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.84[AMR][1000 genomes]
rs11780828	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11781537	0.89[CEU][hapmap];0.83[MEX][hapmap]
rs12681467	0.89[CEU][hapmap]
rs13262989	0.89[CEU][hapmap]
rs13263978	0.89[CEU][hapmap]
rs13267479	0.89[CEU][hapmap]
rs1434936	0.89[CEU][hapmap]
rs1434938	0.89[CEU][hapmap];0.83[MEX][hapmap]
rs1583423	0.83[AMR][1000 genomes]
rs16919105	0.89[CEU][hapmap];0.83[MEX][hapmap]
rs2196255	1.00[CEU][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.97[EUR][1000 genomes]
rs2196256	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4360279	0.88[CEU][hapmap]
rs62520961	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62520963	0.95[EUR][1000 genomes]
rs7835401	0.89[CEU][hapmap]
rs9643596	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv972529	chr8:69561897-69568157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
2	chr8:69559800-69562200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:69560400-69562200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:69560400-69562200	Enhancers	NHLF	lung
5	chr8:69560800-69562200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:69560800-69562200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:69561000-69562200	Enhancers	Fetal Lung	lung
8	chr8:69561200-69562400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:69561400-69562600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:69561600-69562200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:69561600-69562200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:69561600-69562200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr8:69561800-69562200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr8:69562000-69563000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:69562000-69563000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:69562000-69563200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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