Variant report

Variant	rs1434938
Chromosome Location	chr8:69583552-69583553
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69576551..69578510-chr8:69582270..69584407,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10101569	0.97[ASN][1000 genomes]
rs10113102	0.82[ASN][1000 genomes]
rs10957442	0.84[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10957444	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10957445	0.82[ASN][1000 genomes]
rs1116986	0.82[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11780828	0.89[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11781537	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781575	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12543018	0.91[JPT][hapmap]
rs12675138	0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12681248	0.97[ASN][1000 genomes]
rs12681467	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254893	0.82[ASN][1000 genomes]
rs13255506	0.81[ASN][1000 genomes]
rs13262989	0.91[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13263978	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13267479	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13275978	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278185	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1434935	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1434936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1434937	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16919105	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934837	0.89[CEU][hapmap];0.83[MEX][hapmap]
rs1865440	0.88[ASN][1000 genomes]
rs1865441	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1865443	0.81[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1897906	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1991960	0.82[ASN][1000 genomes]
rs2082723	0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2196255	0.89[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2196256	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2196257	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2890437	0.90[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs62520961	0.81[AMR][1000 genomes]
rs62520962	0.81[AMR][1000 genomes]
rs62520966	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472417	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6651315	0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs6982247	0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6982315	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6982710	0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7007623	0.83[ASN][1000 genomes]
rs7016101	0.82[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs7464474	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766871	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7812470	0.99[ASN][1000 genomes]
rs7835401	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7836513	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs959451	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961465	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9643596	0.91[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap]
rs968826	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links