Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69553820..69556062-chr8:69561898..69564089,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10957442	0.87[ASN][1000 genomes]
rs11780358	0.86[ASN][1000 genomes]
rs11780828	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781537	0.81[AMR][1000 genomes]
rs12681467	0.81[AMR][1000 genomes]
rs1434929	0.81[ASN][1000 genomes]
rs1583423	0.86[ASN][1000 genomes]
rs16919105	0.81[AMR][1000 genomes]
rs16934837	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1865440	0.89[ASN][1000 genomes]
rs1865441	0.94[ASN][1000 genomes]
rs1865443	0.86[ASN][1000 genomes]
rs1897906	0.87[ASN][1000 genomes]
rs1991960	0.95[ASN][1000 genomes]
rs2196255	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2196256	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2890437	0.90[ASN][1000 genomes]
rs62520962	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62520963	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6982247	0.93[ASN][1000 genomes]
rs6982710	0.86[ASN][1000 genomes]
rs7007623	0.93[ASN][1000 genomes]
rs959451	0.81[AMR][1000 genomes]
rs961465	0.95[ASN][1000 genomes]
rs968826	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv972529	chr8:69561897-69568157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
2	chr8:69562000-69563000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:69562000-69563000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:69562000-69563200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:69562200-69563200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:69562200-69563600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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