Variant report

Variant	rs1865441
Chromosome Location	chr8:69572813-69572814
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10101569	0.81[ASN][1000 genomes]
rs10957442	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10957444	0.86[JPT][hapmap]
rs1116986	0.85[JPT][hapmap]
rs11780358	0.86[ASN][1000 genomes]
rs11780828	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11781537	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11781575	0.86[JPT][hapmap]
rs12675138	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs12681467	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs13263978	0.82[JPT][hapmap]
rs13275978	0.81[ASN][1000 genomes]
rs1434935	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1434936	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs1434937	0.86[JPT][hapmap]
rs1434938	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1583423	0.86[ASN][1000 genomes]
rs16919105	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1865440	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1865443	0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1897906	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1991960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2082723	0.86[JPT][hapmap]
rs2196255	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2196256	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2890437	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62520961	0.94[ASN][1000 genomes]
rs62520962	0.87[ASN][1000 genomes]
rs62520963	0.82[ASN][1000 genomes]
rs62520966	0.81[ASN][1000 genomes]
rs6982247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6982315	0.86[JPT][hapmap]
rs6982710	0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7007623	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7464474	0.81[ASN][1000 genomes]
rs766871	0.86[JPT][hapmap]
rs959451	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs961465	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs968826	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69569800-69575800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:69572000-69574600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr8:69572800-69574000	ZNF genes & repeats	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links