Variant report

Variant	rs62520966
Chromosome Location	chr8:69578051-69578052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69576551..69578510-chr8:69582270..69584407,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10101569	0.97[ASN][1000 genomes]
rs10113102	0.82[ASN][1000 genomes]
rs10957442	0.86[ASN][1000 genomes]
rs10957445	0.82[ASN][1000 genomes]
rs1116986	0.99[ASN][1000 genomes]
rs11780828	0.83[ASN][1000 genomes]
rs11781537	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781575	0.99[ASN][1000 genomes]
rs12675138	0.96[ASN][1000 genomes]
rs12681248	0.97[ASN][1000 genomes]
rs12681467	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254893	0.82[ASN][1000 genomes]
rs13255506	0.81[ASN][1000 genomes]
rs13262989	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13267479	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13275978	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278185	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16919105	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865440	0.88[ASN][1000 genomes]
rs1865441	0.81[ASN][1000 genomes]
rs1865443	0.88[ASN][1000 genomes]
rs1897906	0.86[ASN][1000 genomes]
rs1991960	0.82[ASN][1000 genomes]
rs2082723	0.99[ASN][1000 genomes]
rs2196255	0.84[ASN][1000 genomes]
rs2196256	0.84[ASN][1000 genomes]
rs2196257	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2890437	0.86[ASN][1000 genomes]
rs62520963	0.81[AMR][1000 genomes]
rs6651315	0.81[ASN][1000 genomes]
rs6982247	0.83[ASN][1000 genomes]
rs6982315	0.95[ASN][1000 genomes]
rs6982710	0.88[ASN][1000 genomes]
rs7007623	0.83[ASN][1000 genomes]
rs7016101	0.82[ASN][1000 genomes]
rs7464474	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766871	0.99[ASN][1000 genomes]
rs7812470	0.99[ASN][1000 genomes]
rs959451	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961465	0.82[ASN][1000 genomes]
rs968826	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3512694	chr8:69577507-69578179	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3512695	chr8:69577565-69578155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69574800-69579600	Weak transcription	Aorta	Aorta
2	chr8:69577800-69578400	Weak transcription	Pancreas	Pancrea
3	chr8:69578000-69580800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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