Variant report

Variant	rs13262989
Chromosome Location	chr8:69611244-69611245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:69535028..69537721-chr8:69610175..69612490,2	MCF-7	breast:
2	chr8:69609836..69613809-chr8:69614366..69618965,6	MCF-7	breast:
3	chr8:69532014..69534673-chr8:69610111..69611773,2	MCF-7	breast:
4	chr8:69603997..69607183-chr8:69609527..69612798,4	MCF-7	breast:
5	chr8:69609765..69614722-chr8:69616148..69622047,8	MCF-7	breast:
6	chr8:69607693..69609742-chr8:69610232..69613117,3	MCF-7	breast:
7	chr8:69610109..69611975-chr8:69765057..69767019,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239184	Chromatin interaction
ENSG00000165084	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10113102	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10957442	0.83[JPT][hapmap]
rs10957444	0.91[JPT][hapmap]
rs10957445	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1116986	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs11780828	0.89[CEU][hapmap]
rs11781537	0.91[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11781575	0.82[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12543018	0.87[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12675138	0.90[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12681467	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13254893	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255506	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13263978	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13267479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275978	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13278185	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1434935	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1434936	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1434937	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs1434938	0.91[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs16919105	0.82[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16934837	0.89[CEU][hapmap]
rs1865443	0.81[JPT][hapmap]
rs1897906	0.83[JPT][hapmap]
rs2082723	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2196255	0.89[CEU][hapmap];0.89[MEX][hapmap]
rs2196256	0.89[CEU][hapmap]
rs2196257	0.83[AMR][1000 genomes]
rs2890437	0.83[JPT][hapmap]
rs62520966	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6472417	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6651315	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6982315	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6982710	0.83[JPT][hapmap]
rs7016101	1.00[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7464474	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs766871	0.82[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7812470	0.80[ASN][1000 genomes]
rs7835401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7836513	0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs959451	0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643596	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69609800-69612800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:69609800-69613000	Enhancers	Colon Smooth Muscle	Colon
3	chr8:69610000-69612200	Enhancers	Fetal Stomach	stomach
4	chr8:69610000-69613000	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:69610200-69612400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr8:69610600-69611800	Enhancers	HSMMtube	muscle
7	chr8:69610600-69613000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:69611000-69611400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:69611000-69612200	Enhancers	HMEC	breast
10	chr8:69611000-69612400	Enhancers	Hela-S3	cervix
11	chr8:69611200-69613000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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