Variant report

Variant	rs6982710
Chromosome Location	chr8:69574336-69574337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10101569	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957442	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10957444	0.91[JPT][hapmap]
rs1116986	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs11780828	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11781537	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs11781575	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12543018	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs12675138	0.80[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12681248	0.88[ASN][1000 genomes]
rs12681467	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs13262989	0.83[JPT][hapmap]
rs13263978	0.87[JPT][hapmap]
rs13267479	0.83[JPT][hapmap]
rs13275978	0.88[ASN][1000 genomes]
rs1434935	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1434936	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1434937	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1434938	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs16919105	0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1865440	0.97[ASN][1000 genomes]
rs1865441	0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1865443	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897906	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1991960	0.91[ASN][1000 genomes]
rs2082723	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2196255	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2196256	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2196257	0.81[ASN][1000 genomes]
rs2890437	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs62520961	0.86[ASN][1000 genomes]
rs62520966	0.88[ASN][1000 genomes]
rs6651315	0.83[JPT][hapmap]
rs6982247	0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6982315	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7007623	0.92[ASN][1000 genomes]
rs7016101	0.83[JPT][hapmap]
rs7464474	0.88[ASN][1000 genomes]
rs766871	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7812470	0.89[ASN][1000 genomes]
rs7835401	0.81[JPT][hapmap]
rs7836513	0.88[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap]
rs959451	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs961465	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs968826	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69569800-69575800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:69572000-69574600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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