Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69592607..69595138-chr8:69612214..69613989,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10101569	0.89[ASN][1000 genomes]
rs10957442	0.80[ASN][1000 genomes]
rs1116986	0.90[ASN][1000 genomes]
rs11781537	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11781575	0.90[ASN][1000 genomes]
rs12675138	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12681248	0.92[ASN][1000 genomes]
rs12681467	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13262989	0.83[AMR][1000 genomes]
rs13275978	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13278185	0.83[AMR][1000 genomes]
rs16919105	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1865440	0.81[ASN][1000 genomes]
rs1865443	0.81[ASN][1000 genomes]
rs1897906	0.80[ASN][1000 genomes]
rs2082723	0.90[ASN][1000 genomes]
rs2196255	0.81[ASN][1000 genomes]
rs2196256	0.81[ASN][1000 genomes]
rs62520966	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6982315	0.87[ASN][1000 genomes]
rs6982710	0.81[ASN][1000 genomes]
rs7464474	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs766871	0.90[ASN][1000 genomes]
rs7812470	0.90[ASN][1000 genomes]
rs959451	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69591400-69594200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: