Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69592607..69595138-chr8:69612214..69613989,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10101569	0.97[ASN][1000 genomes]
rs10957442	0.86[ASN][1000 genomes]
rs1116986	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11780828	0.80[ASN][1000 genomes]
rs11781537	0.97[ASN][1000 genomes]
rs11781575	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675138	0.93[ASN][1000 genomes]
rs12681467	0.97[ASN][1000 genomes]
rs13275978	0.97[ASN][1000 genomes]
rs16919105	0.97[ASN][1000 genomes]
rs1865440	0.85[ASN][1000 genomes]
rs1865443	0.88[ASN][1000 genomes]
rs1897906	0.86[ASN][1000 genomes]
rs2082723	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196255	0.82[ASN][1000 genomes]
rs2196256	0.82[ASN][1000 genomes]
rs2196257	0.92[ASN][1000 genomes]
rs2890437	0.84[ASN][1000 genomes]
rs62520966	0.97[ASN][1000 genomes]
rs6982247	0.81[ASN][1000 genomes]
rs6982315	0.92[ASN][1000 genomes]
rs6982710	0.88[ASN][1000 genomes]
rs7007623	0.81[ASN][1000 genomes]
rs7464474	0.97[ASN][1000 genomes]
rs766871	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7812470	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs959451	0.97[ASN][1000 genomes]
rs968826	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69591400-69594200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:69592000-69593200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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