Variant report

Variant	rs13258843
Chromosome Location	chr8:69953977-69953978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11774326	0.99[EUR][1000 genomes]
rs13249703	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13254975	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13256879	0.98[EUR][1000 genomes]
rs13264794	0.95[EUR][1000 genomes]
rs13264856	0.99[EUR][1000 genomes]
rs13269711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13270005	0.98[EUR][1000 genomes]
rs13272514	0.93[EUR][1000 genomes]
rs13274778	0.95[EUR][1000 genomes]
rs13276126	0.98[EUR][1000 genomes]
rs13277901	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13280997	0.95[EUR][1000 genomes]
rs1365415	0.95[EUR][1000 genomes]
rs1426596	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1541763	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17694606	0.93[EUR][1000 genomes]
rs7014382	0.94[EUR][1000 genomes]
rs7829232	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69946600-69955400	Weak transcription	Fetal Lung	lung
2	chr8:69952000-69959400	Weak transcription	HSMM	muscle
3	chr8:69953800-69954000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:69953800-69955200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:69953800-69959800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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