Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11774326	0.93[EUR][1000 genomes]
rs13249703	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13254975	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13256879	0.92[EUR][1000 genomes]
rs13258843	0.94[EUR][1000 genomes]
rs13264794	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13264856	0.93[EUR][1000 genomes]
rs13269711	0.94[EUR][1000 genomes]
rs13270005	0.92[EUR][1000 genomes]
rs13272514	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13274778	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13276126	0.95[EUR][1000 genomes]
rs13277901	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13280997	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1365415	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1426596	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1541763	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17694606	0.96[EUR][1000 genomes]
rs7829232	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69985000-69991600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:69985600-69992800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:69986800-69991600	Weak transcription	HSMMtube	muscle
4	chr8:69987200-69991600	Weak transcription	NH-A	brain
5	chr8:69988000-69992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:69988200-69991600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:69988800-69993600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:69989600-69993400	Enhancers	Osteobl	bone
9	chr8:69990000-69993800	Enhancers	HSMM	muscle
10	chr8:69990200-69992400	Enhancers	Fetal Heart	heart
11	chr8:69990400-69992800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:69990600-69993000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:69990600-69993000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:69990800-69993000	Enhancers	NHDF-Ad	bronchial
15	chr8:69991000-69991800	Weak transcription	Fetal Stomach	stomach
16	chr8:69991400-69992400	Enhancers	Fetal Lung	lung
17	chr8:69991400-69992400	Enhancers	NHLF	lung
18	chr8:69991400-69992800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:69991400-69992800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr8:69991400-69993000	Enhancers	Aorta	Aorta

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