Variant report

Variant	rs13264794
Chromosome Location	chr8:69986093-69986094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11774326	0.95[EUR][1000 genomes]
rs13249703	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13254975	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13256879	0.93[EUR][1000 genomes]
rs13258843	0.95[EUR][1000 genomes]
rs13264856	0.95[EUR][1000 genomes]
rs13269711	0.95[EUR][1000 genomes]
rs13270005	0.93[EUR][1000 genomes]
rs13272514	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13274778	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13276126	0.96[EUR][1000 genomes]
rs13277901	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13280997	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1365415	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1426596	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541763	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17694606	0.97[EUR][1000 genomes]
rs7014382	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7829232	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69982400-69988200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:69984200-69988200	Enhancers	NHDF-Ad	bronchial
3	chr8:69984400-69986600	Weak transcription	NHLF	lung
4	chr8:69985000-69991600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:69985400-69987000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:69985600-69988200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:69985600-69992800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:69985800-69986800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:69985800-69988200	Enhancers	Osteobl	bone
10	chr8:69985800-69988400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:69986000-69986200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:69986000-69986600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:69986000-69986800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:69986000-69986800	Enhancers	HSMMtube	muscle
15	chr8:69986000-69987200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:69986000-69987200	Enhancers	NH-A	brain
17	chr8:69986000-69987400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:69986000-69989000	Enhancers	HSMM	muscle
19	chr8:69986000-69989200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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