Variant report

Variant	rs13280997
Chromosome Location	chr8:69983931-69983932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:69764800..69767559-chr8:69983778..69986408,3	MCF-7	breast:
2	chr8:69754552..69756282-chr8:69983861..69986611,2	MCF-7	breast:
3	chr8:69982370..69984054-chr8:70022470..70024462,2	MCF-7	breast:
4	chr8:69765987..69767833-chr8:69983718..69985913,2	MCF-7	breast:
5	chr8:69937690..69940143-chr8:69983097..69986013,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction
ENSG00000238808	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11774326	0.95[EUR][1000 genomes]
rs13249703	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13254975	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13256879	0.93[EUR][1000 genomes]
rs13258843	0.95[EUR][1000 genomes]
rs13264794	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13264856	0.95[EUR][1000 genomes]
rs13269711	0.95[EUR][1000 genomes]
rs13270005	0.93[EUR][1000 genomes]
rs13272514	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13274778	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13276126	0.96[EUR][1000 genomes]
rs13277901	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13279808	0.84[AFR][1000 genomes]
rs1365415	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1426596	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541763	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17694606	0.97[EUR][1000 genomes]
rs7014382	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7829232	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv1025578	chr8:69963284-69985807	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69979600-69985200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:69980200-69984600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:69980600-69984800	Enhancers	HSMM	muscle
4	chr8:69981200-69985000	Enhancers	Osteobl	bone
5	chr8:69982200-69984400	Enhancers	NHLF	lung
6	chr8:69982400-69988200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:69982600-69984400	Enhancers	HSMMtube	muscle
8	chr8:69982800-69984400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:69982800-69984400	Enhancers	Hela-S3	cervix
10	chr8:69982800-69984400	Enhancers	HMEC	breast
11	chr8:69982800-69984600	Enhancers	NH-A	brain
12	chr8:69983000-69984200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:69983000-69984400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:69983000-69984800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:69983200-69984400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:69983200-69984400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:69983400-69984400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:69983600-69984400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:69983800-69984000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:69983800-69984000	Enhancers	NHDF-Ad	bronchial
21	chr8:69983800-69984000	Enhancers	NHEK	skin
22	chr8:69983800-69984200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:69983800-69985000	Enhancers	Placenta Amnion	Placenta Amnion

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