Variant report

Variant	rs13268326
Chromosome Location	chr8:65610518-65610519
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:65610299..65612672-chr8:65616238..65617888,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11984562	1.00[ASN][1000 genomes]
rs12155861	0.83[EUR][1000 genomes]
rs13248549	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13248755	0.89[CEU][hapmap]
rs13255280	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs13255521	0.80[EUR][1000 genomes]
rs13258738	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13259721	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13261981	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13263496	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13264230	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13265049	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13266877	1.00[CHD][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs13277887	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs13278868	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13280706	1.00[CHD][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs13280968	0.83[EUR][1000 genomes]
rs17293712	1.00[CHD][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17358602	1.00[CHD][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs2356984	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356990	0.87[EUR][1000 genomes]
rs2356993	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34183793	0.83[EUR][1000 genomes]
rs34204608	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34225190	0.83[EUR][1000 genomes]
rs34341913	0.83[EUR][1000 genomes]
rs34562034	1.00[ASN][1000 genomes]
rs34618827	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34885537	0.81[AMR][1000 genomes]
rs35107809	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35491729	0.80[EUR][1000 genomes]
rs35504769	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35942841	0.83[EUR][1000 genomes]
rs36016124	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36053206	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36117382	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4134341	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4363236	0.80[EUR][1000 genomes]
rs62521082	0.81[AMR][1000 genomes]
rs62521147	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62521150	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62521156	0.83[EUR][1000 genomes]
rs62521157	0.83[EUR][1000 genomes]
rs62521159	0.82[EUR][1000 genomes]
rs66985061	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6980478	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs6981409	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72656485	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72656489	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9650211	0.89[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650212	0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13268326	CYP7B1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65605600-65615200	Weak transcription	Aorta	Aorta
2	chr8:65606000-65612600	Weak transcription	Pancreas	Pancrea
3	chr8:65606000-65612600	Weak transcription	Spleen	Spleen
4	chr8:65608000-65611600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:65608000-65612200	Weak transcription	Fetal Brain Female	brain
6	chr8:65608000-65612400	Weak transcription	Brain Anterior Caudate	brain
7	chr8:65608000-65612400	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:65608000-65612600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:65608200-65612600	Weak transcription	Brain Substantia Nigra	brain
10	chr8:65608800-65612600	Weak transcription	Brain Angular Gyrus	brain
11	chr8:65610000-65611800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:65610200-65611000	Enhancers	GM12878-XiMat	blood
13	chr8:65610200-65611800	Enhancers	Liver	Liver
14	chr8:65610400-65612600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links