Variant report

Variant	rs9650211
Chromosome Location	chr8:65636139-65636140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11984562	1.00[ASN][1000 genomes]
rs12155861	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12216788	0.80[AMR][1000 genomes]
rs13248549	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13248755	1.00[CEU][hapmap]
rs13255280	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs13255521	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13258738	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13259721	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13261981	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13263496	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13264230	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13265049	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13266877	0.80[CEU][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs13268326	0.89[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277887	0.89[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs13278868	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13280706	0.80[CEU][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap]
rs13280968	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17293712	0.89[CEU][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17358602	0.80[CEU][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes]
rs2356984	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356990	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2356993	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34122018	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34183793	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34204608	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34225190	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34341913	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34562034	1.00[ASN][1000 genomes]
rs34618827	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34885537	0.86[AMR][1000 genomes]
rs35107809	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35491729	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35504769	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35942841	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36016124	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36053206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36117382	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4134341	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4363236	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62521082	0.86[AMR][1000 genomes]
rs62521147	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62521150	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62521156	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62521157	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62521159	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66985061	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6980478	1.00[GIH][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6981409	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72656485	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72656489	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9650212	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9650211	ZRSR2	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65635000-65638000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:65635000-65643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:65635800-65639200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:65635800-65642200	Enhancers	Placenta Amnion	Placenta Amnion

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