Variant report
| Variant | rs34618827 |
|---|---|
| Chromosome Location | chr8:65578898-65578899 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs13261981 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13264230 | 0.81[AMR][1000 genomes] |
| rs13266877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13268326 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13277887 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17293712 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17358602 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2356984 | 0.84[AMR][1000 genomes] |
| rs2356990 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2356993 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34522585 | 1.00[ASN][1000 genomes] |
| rs34885537 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35107809 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs36053206 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs62519840 | 1.00[ASN][1000 genomes] |
| rs62519841 | 1.00[ASN][1000 genomes] |
| rs62519842 | 1.00[ASN][1000 genomes] |
| rs62519843 | 1.00[ASN][1000 genomes] |
| rs62519845 | 1.00[ASN][1000 genomes] |
| rs62519847 | 1.00[ASN][1000 genomes] |
| rs62519848 | 1.00[ASN][1000 genomes] |
| rs62521079 | 1.00[ASN][1000 genomes] |
| rs62521080 | 1.00[ASN][1000 genomes] |
| rs62521082 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9650211 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs9650212 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | esv1847262 | chr8:65509694-65595527 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv6231 | chr8:65538593-65583623 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2761434 | chr8:65578467-66567678 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65571400-65585400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr8:65578400-65580000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
