Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13261981	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13264230	0.81[AMR][1000 genomes]
rs13266877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13268326	0.81[AMR][1000 genomes]
rs13277887	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17293712	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17358602	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356984	0.84[AMR][1000 genomes]
rs2356990	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2356993	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34522585	1.00[ASN][1000 genomes]
rs34618827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34885537	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35107809	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36053206	0.86[AMR][1000 genomes]
rs62519840	1.00[ASN][1000 genomes]
rs62519841	1.00[ASN][1000 genomes]
rs62519842	1.00[ASN][1000 genomes]
rs62519843	1.00[ASN][1000 genomes]
rs62519845	1.00[ASN][1000 genomes]
rs62519847	1.00[ASN][1000 genomes]
rs62519848	1.00[ASN][1000 genomes]
rs62521079	1.00[ASN][1000 genomes]
rs62521080	1.00[ASN][1000 genomes]
rs9650211	0.86[AMR][1000 genomes]
rs9650212	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6231	chr8:65538593-65583623	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65553000-65555200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:65553200-65555200	Enhancers	HMEC	breast
3	chr8:65553400-65555200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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