Variant report

Variant	rs13274962
Chromosome Location	chr8:59210499-59210500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10504252	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12546637	0.86[AMR][1000 genomes]
rs12546705	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13248215	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13249017	0.81[AFR][1000 genomes]
rs13250098	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13269231	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13270284	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13272948	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13275601	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13279758	0.87[EUR][1000 genomes]
rs13280150	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16923355	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2925656	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34333385	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34931209	0.86[AMR][1000 genomes]
rs4496957	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4737494	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4738659	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4738666	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4738667	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4738668	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738669	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4738670	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62512350	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62512354	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6989401	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6989503	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6995739	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6998045	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7006132	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7011612	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs721518	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7818992	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7827651	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7830983	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7831095	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7834713	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837145	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59209200-59211000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59209400-59210800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:59209600-59210600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:59209800-59210800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:59209800-59211000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:59209800-59211200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:59210000-59210600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:59210200-59210600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:59210400-59210600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:59210400-59210600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:59210400-59212800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:59210400-59212800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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