Variant report

Variant	rs12546705
Chromosome Location	chr8:59195288-59195289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10504251	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10504252	0.82[AMR][1000 genomes]
rs12546637	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677024	0.94[ASN][1000 genomes]
rs12680043	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13249017	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13250098	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272948	0.85[AMR][1000 genomes]
rs13274962	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13280150	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923211	0.85[CHB][hapmap]
rs34931209	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496957	0.83[AMR][1000 genomes]
rs4737494	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4738653	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4738654	0.89[ASN][1000 genomes]
rs4738659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738665	0.91[ASN][1000 genomes]
rs62512350	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62512354	0.85[AMR][1000 genomes]
rs6995423	0.91[ASN][1000 genomes]
rs6995739	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998045	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827651	0.83[AMR][1000 genomes]
rs7837145	0.82[AMR][1000 genomes]
rs9643501	0.92[ASN][1000 genomes]
rs9643504	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59185400-59195800	Weak transcription	Right Atrium	heart
2	chr8:59191400-59196000	Weak transcription	Gastric	stomach
3	chr8:59191600-59195800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:59191600-59196200	Weak transcription	Hela-S3	cervix
5	chr8:59193200-59195400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:59193400-59195400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:59193600-59195800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:59194200-59195800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:59194800-59195400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:59195000-59196400	Enhancers	HepG2	liver
11	chr8:59195200-59195800	Weak transcription	Pancreas	Pancrea

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