Variant report

Variant	rs4738665
Chromosome Location	chr8:59222319-59222320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10504251	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12546637	0.91[ASN][1000 genomes]
rs12546705	0.91[ASN][1000 genomes]
rs12677024	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13249017	0.81[ASN][1000 genomes]
rs13250098	0.91[ASN][1000 genomes]
rs13280150	0.91[ASN][1000 genomes]
rs34931209	0.91[ASN][1000 genomes]
rs4738654	0.81[ASN][1000 genomes]
rs4738659	0.87[ASN][1000 genomes]
rs62512350	0.87[ASN][1000 genomes]
rs6995423	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6995739	0.91[ASN][1000 genomes]
rs6998045	0.91[ASN][1000 genomes]
rs9643501	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643504	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59220200-59226000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59221600-59224200	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:59222200-59222600	Active TSS	GM12878-XiMat	blood
4	chr8:59222200-59223400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links