Variant report

Variant	rs9643501
Chromosome Location	chr8:59172816-59172817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504251	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12546637	0.92[ASN][1000 genomes]
rs12546705	0.92[ASN][1000 genomes]
rs12677024	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12680043	0.88[ASN][1000 genomes]
rs13249017	0.81[ASN][1000 genomes]
rs13250098	0.92[ASN][1000 genomes]
rs13280150	0.92[ASN][1000 genomes]
rs16923211	0.85[CHB][hapmap]
rs34931209	0.92[ASN][1000 genomes]
rs4738653	0.83[ASN][1000 genomes]
rs4738654	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738659	0.88[ASN][1000 genomes]
rs4738665	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62512350	0.83[ASN][1000 genomes]
rs6995423	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6995739	0.92[ASN][1000 genomes]
rs6998045	0.92[ASN][1000 genomes]
rs9643504	0.96[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59170600-59173000	Weak transcription	GM12878-XiMat	blood
2	chr8:59170800-59187800	Weak transcription	Fetal Lung	lung
3	chr8:59172400-59173400	Enhancers	Fetal Muscle Leg	muscle
4	chr8:59172400-59173800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:59172600-59173000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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