Variant report

Variant	rs12680043
Chromosome Location	chr8:59156411-59156412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10504251	0.87[ASN][1000 genomes]
rs12546637	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12546705	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12677024	0.89[ASN][1000 genomes]
rs13250098	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13280150	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16923211	0.85[CHB][hapmap]
rs34931209	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4738653	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4738654	0.93[ASN][1000 genomes]
rs4738659	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6471694	0.83[AFR][1000 genomes]
rs6995423	0.96[ASN][1000 genomes]
rs6995739	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6998045	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9643501	0.88[ASN][1000 genomes]
rs9643504	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59147400-59161000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59154800-59157600	Enhancers	Fetal Heart	heart
3	chr8:59155200-59156800	Active TSS	Fetal Brain Female	brain
4	chr8:59155800-59156600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:59155800-59157400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr8:59156000-59156600	Active TSS	Fetal Brain Male	brain
7	chr8:59156400-59157000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:59156400-59157000	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:59156400-59157200	Weak transcription	Brain Germinal Matrix	brain
10	chr8:59156400-59157400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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