Variant report

Variant	rs13275178
Chromosome Location	chr8:113707571-113707572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1026488	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1026489	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11776457	1.00[YRI][hapmap]
rs11787239	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11986076	0.91[ASN][1000 genomes]
rs13248739	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254460	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13255029	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13256271	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13256724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257842	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13258944	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13259225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13259298	0.91[ASN][1000 genomes]
rs13261160	0.96[CEU][hapmap]
rs13261301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264919	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13266975	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13267779	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13272429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13275398	0.95[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13276278	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1380139	0.81[ASN][1000 genomes]
rs1380140	1.00[JPT][hapmap]
rs1380141	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1458999	1.00[JPT][hapmap]
rs1459006	0.81[ASN][1000 genomes]
rs170760	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1947633	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1993607	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs2045540	0.81[ASN][1000 genomes]
rs2125553	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs2194601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2216891	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2219486	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs231278	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231280	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231282	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231283	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231284	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs231287	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs231288	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231301	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs231302	1.00[JPT][hapmap]
rs231305	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs231306	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs231312	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs231313	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs231314	0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs231315	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231317	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231320	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231321	0.91[ASN][1000 genomes]
rs231322	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs231323	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2446469	1.00[JPT][hapmap]
rs2511523	1.00[JPT][hapmap]
rs2511524	0.81[ASN][1000 genomes]
rs2511527	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2511529	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs2511530	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs28830583	0.91[ASN][1000 genomes]
rs370168	0.87[CEU][hapmap];0.91[ASN][1000 genomes]
rs373880	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3950980	1.00[JPT][hapmap]
rs4028265	0.81[ASN][1000 genomes]
rs4876298	1.00[JPT][hapmap]
rs4876499	1.00[JPT][hapmap]
rs4876501	0.81[ASN][1000 genomes]
rs56248947	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013313	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891324	chr8:113647451-113732965	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	n/a
6	nsv972245	chr8:113707426-113718277	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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