Variant report

Variant	rs13280610
Chromosome Location	chr8:124891264-124891265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124889419..124892417-chr8:124901110..124903645,2	K562	blood:
2	chr8:124889119..124891271-chr8:124903974..124906371,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11987138	0.82[JPT][hapmap]
rs11993828	0.88[CEU][hapmap]
rs13252473	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13260693	0.96[EUR][1000 genomes]
rs13277597	0.96[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16893054	0.82[JPT][hapmap]
rs16899008	0.87[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes]
rs16899027	0.96[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16899029	0.96[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34512633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34943415	0.95[EUR][1000 genomes]
rs35367669	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35444607	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4285467	0.88[CEU][hapmap]
rs4285468	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs4472497	0.88[CEU][hapmap]
rs4478556	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs4509302	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4537289	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs4587311	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs4870873	0.95[EUR][1000 genomes]
rs4870874	0.94[EUR][1000 genomes]
rs4870875	0.96[CEU][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4870879	0.88[CEU][hapmap]
rs4871417	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4871421	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4871422	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs66846856	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67648121	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7005131	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs746747	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs7821233	0.82[JPT][hapmap]
rs7822699	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7826291	0.88[CEU][hapmap]
rs7837892	0.82[JPT][hapmap]
rs7838437	0.87[CEU][hapmap]
rs7839570	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13280610	TATDN1	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124887800-124892200	Enhancers	NHDF-Ad	bronchial
2	chr8:124888200-124893800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:124888800-124891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:124889200-124891400	Enhancers	Adipose Nuclei	Adipose
5	chr8:124889200-124891600	Enhancers	Fetal Muscle Leg	muscle
6	chr8:124889200-124892200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:124889400-124891400	Enhancers	NHLF	lung
8	chr8:124889400-124894600	Weak transcription	Right Atrium	heart
9	chr8:124889600-124891600	Enhancers	Fetal Muscle Trunk	muscle
10	chr8:124890200-124891400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:124890200-124892200	Enhancers	Fetal Stomach	stomach
12	chr8:124890400-124891400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:124890800-124891400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:124890800-124891400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:124890800-124891400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr8:124890800-124891400	Enhancers	Hela-S3	cervix
17	chr8:124890800-124891400	Enhancers	HSMMtube	muscle
18	chr8:124890800-124892000	Weak transcription	Ovary	ovary
19	chr8:124891000-124893400	Weak transcription	Osteobl	bone
20	chr8:124891200-124891400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:124891200-124891400	Enhancers	Stomach Smooth Muscle	stomach
22	chr8:124891200-124892400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links