Variant report

Variant	rs16899008
Chromosome Location	chr8:124908662-124908663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124908341..124910827-chr8:124923063..124925979,2	K562	blood:
2	chr8:124906436..124908763-chr8:124916387..124918093,2	K562	blood:
3	chr8:124901095..124905253-chr8:124905623..124909298,4	MCF-7	breast:
4	chr8:124905153..124906934-chr8:124908337..124910194,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11987138	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs11993828	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs13252473	0.88[CEU][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes]
rs13260693	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13277597	0.92[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13280610	0.87[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes]
rs16893054	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs16899027	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16899029	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16899037	0.83[ASN][1000 genomes]
rs16899040	0.82[ASN][1000 genomes]
rs16899044	0.83[ASN][1000 genomes]
rs16899047	0.83[ASN][1000 genomes]
rs34512633	0.96[EUR][1000 genomes]
rs34943415	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35367669	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35444607	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4285467	0.84[CEU][hapmap]
rs4285468	0.84[CEU][hapmap]
rs4355755	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4472497	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs4478556	0.84[CEU][hapmap]
rs4509302	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4537289	0.84[CEU][hapmap]
rs4587311	0.84[CEU][hapmap]
rs4596635	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4870873	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4870874	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4870875	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4870876	0.83[ASN][1000 genomes]
rs4870879	0.84[CEU][hapmap]
rs4871417	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4871421	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4871422	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4871423	0.83[ASN][1000 genomes]
rs4871424	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4871425	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4871426	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4871433	0.82[JPT][hapmap]
rs55834043	0.83[ASN][1000 genomes]
rs66846856	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67648121	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7005131	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs746745	0.82[EUR][1000 genomes]
rs746746	0.82[EUR][1000 genomes]
rs746747	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7821233	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7822699	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7826291	0.84[CEU][hapmap]
rs7837892	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7838437	0.84[CEU][hapmap]
rs7839570	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124905800-124909000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124906600-124909200	Enhancers	Ovary	ovary
3	chr8:124907000-124909600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:124907400-124909800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:124907400-124909800	Enhancers	NHDF-Ad	bronchial
6	chr8:124907800-124910000	Weak transcription	Liver	Liver
7	chr8:124908200-124909000	Enhancers	Fetal Lung	lung
8	chr8:124908200-124909200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:124908200-124909200	Enhancers	Adipose Nuclei	Adipose
10	chr8:124908200-124909600	Enhancers	Fetal Muscle Leg	muscle
11	chr8:124908400-124909600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:124908400-124909600	Enhancers	Hela-S3	cervix
13	chr8:124908400-124909800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:124908600-124908800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:124908600-124908800	Enhancers	Fetal Intestine Small	intestine
16	chr8:124908600-124909000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:124908600-124909800	Enhancers	NHEK	skin
18	chr8:124908600-124910000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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