Variant report

Variant	rs16899029
Chromosome Location	chr8:124922448-124922449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124915045..124918415-chr8:124921775..124925187,3	MCF-7	breast:
2	chr8:124920123..124922608-chr8:124925471..124927774,2	MCF-7	breast:
3	chr8:124843791..124846042-chr8:124921858..124924618,2	MCF-7	breast:
4	chr8:124920895..124922660-chr8:124926513..124928281,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1007106	0.86[JPT][hapmap]
rs11987138	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs11993828	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs13250190	0.86[JPT][hapmap]
rs13252473	0.96[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs13260693	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13268486	0.86[JPT][hapmap]
rs13268977	0.86[JPT][hapmap]
rs13277597	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13280610	0.96[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16893054	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs16899008	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16899027	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899037	0.92[ASN][1000 genomes]
rs16899040	0.90[ASN][1000 genomes]
rs16899044	0.91[ASN][1000 genomes]
rs16899047	0.91[ASN][1000 genomes]
rs34512633	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34895349	0.84[ASN][1000 genomes]
rs34943415	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35367669	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35444607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4242351	0.86[JPT][hapmap]
rs4285467	0.92[CEU][hapmap]
rs4285468	0.92[CEU][hapmap];0.81[CHD][hapmap];0.95[TSI][hapmap]
rs4299983	0.86[JPT][hapmap]
rs4355755	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4413758	0.86[JPT][hapmap]
rs4472497	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4478556	0.92[CEU][hapmap];0.81[CHD][hapmap];0.95[TSI][hapmap]
rs4492357	0.86[JPT][hapmap]
rs4509302	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4537289	0.92[CEU][hapmap];0.81[CHD][hapmap];0.95[TSI][hapmap]
rs4587311	0.92[CEU][hapmap];0.81[CHD][hapmap];0.95[TSI][hapmap]
rs4596635	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4870873	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4870874	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870875	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870876	0.92[ASN][1000 genomes]
rs4870879	0.92[CEU][hapmap]
rs4871417	1.00[CEU][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4871421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871422	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871423	0.92[ASN][1000 genomes]
rs4871424	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4871425	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4871426	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4871428	0.86[JPT][hapmap]
rs4871429	0.86[JPT][hapmap]
rs4871430	0.86[JPT][hapmap]
rs4871431	0.86[JPT][hapmap]
rs4871432	0.84[JPT][hapmap]
rs4871433	0.90[JPT][hapmap]
rs4871434	0.86[JPT][hapmap]
rs4871435	0.86[JPT][hapmap]
rs4871436	0.86[JPT][hapmap]
rs4871437	0.86[JPT][hapmap]
rs4871439	0.86[JPT][hapmap]
rs55834043	0.91[ASN][1000 genomes]
rs66846856	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67648121	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6984557	0.86[JPT][hapmap]
rs7005131	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7464664	0.86[JPT][hapmap]
rs746745	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs746746	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs746747	0.92[CEU][hapmap];0.95[CHD][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7821233	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7822699	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7826291	0.92[CEU][hapmap]
rs7837892	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7838437	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs7838453	0.86[JPT][hapmap]
rs7838473	0.86[JPT][hapmap]
rs7839327	0.86[JPT][hapmap]
rs7839570	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842762	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16899029	TATDN1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124919000-124923600	Weak transcription	Adipose Nuclei	Adipose
2	chr8:124919600-124923200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:124920200-124923000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr8:124920800-124923600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:124921400-124922800	Weak transcription	Stomach Mucosa	stomach

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