Variant report

Variant	rs55834043
Chromosome Location	chr8:124928892-124928893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124927561..124929328-chr8:124931006..124932558,2	MCF-7	breast:
2	chr8:124928038..124929759-chr8:124955238..124957453,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11987138	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13260693	0.84[ASN][1000 genomes]
rs13277597	0.80[ASN][1000 genomes]
rs16893054	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899008	0.83[ASN][1000 genomes]
rs16899027	0.91[ASN][1000 genomes]
rs16899029	0.91[ASN][1000 genomes]
rs16899037	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899040	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899044	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899047	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34895349	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34943415	0.92[ASN][1000 genomes]
rs35444607	0.90[ASN][1000 genomes]
rs4355755	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4596635	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870873	0.88[ASN][1000 genomes]
rs4870874	0.87[ASN][1000 genomes]
rs4870875	0.91[ASN][1000 genomes]
rs4870876	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871421	0.90[ASN][1000 genomes]
rs4871422	0.92[ASN][1000 genomes]
rs4871423	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871424	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871425	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871426	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66846856	0.82[ASN][1000 genomes]
rs7005131	0.88[ASN][1000 genomes]
rs746745	0.85[ASN][1000 genomes]
rs746746	0.85[ASN][1000 genomes]
rs746747	0.85[ASN][1000 genomes]
rs7821233	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822699	0.89[ASN][1000 genomes]
rs7837892	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839570	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv612143	chr8:124927711-124988267	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124927000-124930000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:124927000-124932600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:124927600-124929000	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:124927600-124932800	Weak transcription	Stomach Mucosa	stomach
5	chr8:124927600-124934000	Weak transcription	HSMMtube	muscle
6	chr8:124927600-124934000	Weak transcription	K562	blood
7	chr8:124928200-124929200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:124928200-124931400	Weak transcription	Fetal Intestine Large	intestine
9	chr8:124928400-124929000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:124928600-124932400	Weak transcription	Fetal Intestine Small	intestine
11	chr8:124928800-124934000	Weak transcription	Primary B cells from peripheral blood	blood

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