Variant report

Variant	rs7839570
Chromosome Location	chr8:124919627-124919628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124918718..124920943-chr8:124922678..124925068,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11987138	0.89[ASN][1000 genomes]
rs13252473	0.94[EUR][1000 genomes]
rs13260693	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13277597	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13280610	0.92[EUR][1000 genomes]
rs16893054	0.89[ASN][1000 genomes]
rs16899008	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16899027	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16899029	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16899037	0.90[ASN][1000 genomes]
rs16899040	0.88[ASN][1000 genomes]
rs16899044	0.89[ASN][1000 genomes]
rs16899047	0.89[ASN][1000 genomes]
rs34512633	0.92[EUR][1000 genomes]
rs34895349	0.82[ASN][1000 genomes]
rs34943415	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35367669	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35444607	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4355755	0.88[ASN][1000 genomes]
rs4509302	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4596635	0.90[ASN][1000 genomes]
rs4870873	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870874	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4870875	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870876	0.90[ASN][1000 genomes]
rs4871417	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4871421	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871422	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871423	0.90[ASN][1000 genomes]
rs4871424	0.90[ASN][1000 genomes]
rs4871425	0.90[ASN][1000 genomes]
rs4871426	0.90[ASN][1000 genomes]
rs55834043	0.89[ASN][1000 genomes]
rs66846856	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67648121	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7005131	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7821233	0.89[ASN][1000 genomes]
rs7822699	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837892	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv820240	chr8:124916620-124920526	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124919000-124923600	Weak transcription	Adipose Nuclei	Adipose
2	chr8:124919200-124919800	Enhancers	K562	blood
3	chr8:124919200-124920200	Enhancers	Gastric	stomach
4	chr8:124919600-124920200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr8:124919600-124921400	Enhancers	Stomach Mucosa	stomach
6	chr8:124919600-124923200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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