Variant report

Variant	rs16899040
Chromosome Location	chr8:124927061-124927062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124920123..124922608-chr8:124925471..124927774,2	MCF-7	breast:
2	chr8:124925782..124927676-chr8:124934703..124936362,2	MCF-7	breast:
3	chr8:124920895..124922660-chr8:124926513..124928281,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11987138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13260693	0.83[ASN][1000 genomes]
rs16893054	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899008	0.82[ASN][1000 genomes]
rs16899027	0.90[ASN][1000 genomes]
rs16899029	0.90[ASN][1000 genomes]
rs16899037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16899044	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34895349	0.86[ASN][1000 genomes]
rs34943415	0.90[ASN][1000 genomes]
rs35444607	0.89[ASN][1000 genomes]
rs4355755	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4596635	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870873	0.87[ASN][1000 genomes]
rs4870874	0.86[ASN][1000 genomes]
rs4870875	0.90[ASN][1000 genomes]
rs4870876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871421	0.89[ASN][1000 genomes]
rs4871422	0.91[ASN][1000 genomes]
rs4871423	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871424	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871425	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55834043	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66846856	0.81[ASN][1000 genomes]
rs7005131	0.87[ASN][1000 genomes]
rs746745	0.83[ASN][1000 genomes]
rs746746	0.83[ASN][1000 genomes]
rs746747	0.83[ASN][1000 genomes]
rs7821233	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822699	0.88[ASN][1000 genomes]
rs7837892	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7839570	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124925200-124927400	Weak transcription	Stomach Mucosa	stomach
2	chr8:124925800-124927400	Weak transcription	Fetal Intestine Large	intestine
3	chr8:124926400-124927600	Enhancers	K562	blood
4	chr8:124926600-124927600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:124926800-124927200	Active TSS	HSMMtube	muscle
6	chr8:124926800-124927400	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:124926800-124928600	Active TSS	Fetal Intestine Small	intestine
8	chr8:124927000-124927800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:124927000-124928000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:124927000-124928400	Active TSS	Fetal Stomach	stomach
11	chr8:124927000-124928800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr8:124927000-124930000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:124927000-124932600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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