Variant report

Variant	rs34895349
Chromosome Location	chr8:124934122-124934123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124834856..124836291-chr8:124933990..124935310,7	MCF-7	breast:
2	chr8:124834349..124836501-chr8:124934060..124935501,22	MCF-7	breast:
3	chr8:124835624..124840070-chr8:124931025..124937507,8	MCF-7	breast:
4	chr8:124933337..124936476-chr8:125016113..125019961,3	MCF-7	breast:
5	chr8:124929623..124931147-chr8:124932693..124935660,2	K562	blood:
6	chr8:124779448..124782514-chr8:124930705..124935453,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176853	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11987138	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11993828	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13267281	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16893054	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16899027	0.84[ASN][1000 genomes]
rs16899029	0.84[ASN][1000 genomes]
rs16899037	0.88[ASN][1000 genomes]
rs16899040	0.86[ASN][1000 genomes]
rs16899044	0.87[ASN][1000 genomes]
rs16899047	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34943415	0.84[ASN][1000 genomes]
rs35444607	0.83[ASN][1000 genomes]
rs4285467	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4285468	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4355755	0.87[ASN][1000 genomes]
rs4472497	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4478556	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4537289	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4587311	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4596635	0.88[ASN][1000 genomes]
rs4870873	0.81[ASN][1000 genomes]
rs4870875	0.84[ASN][1000 genomes]
rs4870876	0.88[ASN][1000 genomes]
rs4870878	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4870879	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4871421	0.83[ASN][1000 genomes]
rs4871422	0.85[ASN][1000 genomes]
rs4871423	0.88[ASN][1000 genomes]
rs4871424	0.88[ASN][1000 genomes]
rs4871425	0.88[ASN][1000 genomes]
rs4871426	0.88[ASN][1000 genomes]
rs55834043	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7005131	0.81[ASN][1000 genomes]
rs746745	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs746746	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs746747	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7821233	0.87[ASN][1000 genomes]
rs7822699	0.82[ASN][1000 genomes]
rs7837892	0.87[ASN][1000 genomes]
rs7839570	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv612143	chr8:124927711-124988267	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124931000-124934600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:124931400-124936000	Enhancers	Fetal Intestine Large	intestine
3	chr8:124932400-124934400	Enhancers	Fetal Intestine Small	intestine
4	chr8:124932600-124934200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:124932600-124935800	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:124932800-124934600	Enhancers	Stomach Mucosa	stomach
7	chr8:124932800-124935000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:124933000-124934200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr8:124933200-124934400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:124933400-124934200	Enhancers	Fetal Muscle Trunk	muscle
11	chr8:124933400-124934200	Weak transcription	GM12878-XiMat	blood
12	chr8:124933400-124934400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr8:124933600-124934200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr8:124933600-124934400	Enhancers	Fetal Muscle Leg	muscle
15	chr8:124933600-124935400	Enhancers	Placenta	Placenta
16	chr8:124933800-124934200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:124933800-124934200	Enhancers	Colonic Mucosa	Colon
18	chr8:124933800-124934200	Enhancers	Duodenum Mucosa	Duodenum
19	chr8:124933800-124934400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:124933800-124934400	Enhancers	Pancreas	Pancrea
21	chr8:124933800-124934600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr8:124933800-124934800	Enhancers	Brain Germinal Matrix	brain
23	chr8:124933800-124934800	Enhancers	Esophagus	oesophagus
24	chr8:124933800-124935400	Enhancers	Gastric	stomach
25	chr8:124933800-124935400	Enhancers	Lung	lung
26	chr8:124933800-124935600	Enhancers	HUVEC	blood vessel
27	chr8:124934000-124934200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:124934000-124934200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr8:124934000-124934200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr8:124934000-124934200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:124934000-124934200	Enhancers	Adipose Nuclei	Adipose
32	chr8:124934000-124934200	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr8:124934000-124934200	Enhancers	Brain Substantia Nigra	brain
34	chr8:124934000-124934200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr8:124934000-124934200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr8:124934000-124934200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr8:124934000-124934200	Enhancers	Stomach Smooth Muscle	stomach
38	chr8:124934000-124934200	Enhancers	A549	lung
39	chr8:124934000-124934200	Active TSS	Hela-S3	cervix
40	chr8:124934000-124934400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:124934000-124934400	Enhancers	Brain Hippocampus Middle	brain
42	chr8:124934000-124934400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr8:124934000-124934400	Enhancers	Ovary	ovary
44	chr8:124934000-124934400	Enhancers	Right Atrium	heart
45	chr8:124934000-124934600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:124934000-124934600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr8:124934000-124934600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
48	chr8:124934000-124934600	Enhancers	NHEK	skin
49	chr8:124934000-124934800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr8:124934000-124934800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links