Variant report
| Variant | rs13281350 |
|---|---|
| Chromosome Location | chr8:79068642-79068643 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10101111 | 0.90[ASN][1000 genomes] |
| rs11776781 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11780821 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12674634 | 0.82[ASN][1000 genomes] |
| rs12677810 | 0.83[ASN][1000 genomes] |
| rs12680674 | 0.83[ASN][1000 genomes] |
| rs13248802 | 0.83[ASN][1000 genomes] |
| rs13249330 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13275931 | 0.82[ASN][1000 genomes] |
| rs13281781 | 0.88[ASN][1000 genomes] |
| rs16939614 | 0.83[ASN][1000 genomes] |
| rs16939622 | 0.83[ASN][1000 genomes] |
| rs17407066 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17407760 | 0.82[ASN][1000 genomes] |
| rs1835478 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1978660 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35370736 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35583505 | 0.82[ASN][1000 genomes] |
| rs35910073 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs60731706 | 0.82[ASN][1000 genomes] |
| rs6989014 | 0.83[ASN][1000 genomes] |
| rs7004921 | 0.84[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7010818 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7836490 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831364 | chr8:79034769-79223319 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:79067200-79070400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
