Variant report

Variant	rs35910073
Chromosome Location	chr8:79120356-79120357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10101111	1.00[ASN][1000 genomes]
rs11776781	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780821	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674634	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12677810	0.86[AFR][1000 genomes]
rs13249330	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275931	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13278146	0.87[ASN][1000 genomes]
rs13281350	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17407066	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17407760	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1835478	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978660	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34301985	0.85[ASN][1000 genomes]
rs35370736	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35583505	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60731706	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994796	0.85[ASN][1000 genomes]
rs7004921	1.00[ASN][1000 genomes]
rs7010818	0.82[AFR][1000 genomes]
rs71533185	0.85[ASN][1000 genomes]
rs7839855	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79112400-79120400	Weak transcription	Hela-S3	cervix
2	chr8:79117400-79122600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:79117600-79122600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:79117800-79122400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:79118400-79123800	Enhancers	NHEK	skin
6	chr8:79118600-79120800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:79118600-79124800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:79118800-79123600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:79118800-79124600	Enhancers	HMEC	breast
10	chr8:79119200-79121400	Enhancers	HUVEC	blood vessel
11	chr8:79119200-79124800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:79119400-79121400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:79119400-79122600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:79119600-79120400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:79119600-79122400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:79119600-79128400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:79119800-79120600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:79119800-79124800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:79120000-79121000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:79120000-79121200	Enhancers	NH-A	brain
21	chr8:79120000-79121600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:79120000-79121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:79120000-79124600	Enhancers	Osteobl	bone
24	chr8:79120200-79120400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:79120200-79121200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:79120200-79121200	Enhancers	HSMM	muscle

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