Variant report

Variant	rs13278146
Chromosome Location	chr8:79193545-79193546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10101111	0.87[ASN][1000 genomes]
rs11776781	0.87[ASN][1000 genomes]
rs11780821	0.87[ASN][1000 genomes]
rs12674634	0.95[ASN][1000 genomes]
rs13249330	0.87[ASN][1000 genomes]
rs13275931	0.95[ASN][1000 genomes]
rs17407066	0.87[ASN][1000 genomes]
rs17407760	0.95[ASN][1000 genomes]
rs1835478	0.87[ASN][1000 genomes]
rs1978660	0.87[ASN][1000 genomes]
rs34301985	0.93[ASN][1000 genomes]
rs35583505	0.95[ASN][1000 genomes]
rs35910073	0.87[ASN][1000 genomes]
rs60731706	0.95[ASN][1000 genomes]
rs6994796	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004921	0.87[ASN][1000 genomes]
rs71533185	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7839855	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv6266	chr8:79156823-79202020	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2762752	chr8:79178614-79194047	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79193400-79193600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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