Variant report

Variant	rs34301985
Chromosome Location	chr8:79260749-79260750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10101111	0.85[ASN][1000 genomes]
rs11776781	0.85[ASN][1000 genomes]
rs11780821	0.85[ASN][1000 genomes]
rs12674634	0.93[ASN][1000 genomes]
rs13249330	0.85[ASN][1000 genomes]
rs13275931	0.93[ASN][1000 genomes]
rs13278146	0.93[ASN][1000 genomes]
rs17407066	0.85[ASN][1000 genomes]
rs17407760	0.93[ASN][1000 genomes]
rs1835478	0.85[ASN][1000 genomes]
rs1978660	0.85[ASN][1000 genomes]
rs35583505	0.93[ASN][1000 genomes]
rs35910073	0.85[ASN][1000 genomes]
rs60731706	0.93[ASN][1000 genomes]
rs6994796	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004921	0.85[ASN][1000 genomes]
rs71533185	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839855	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2761180	chr8:79195937-79291581	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv891056	chr8:79206819-79394667	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79260200-79261600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:79260600-79261400	Enhancers	NHEK	skin
3	chr8:79260600-79261600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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