Variant report

Variant	rs17407066
Chromosome Location	chr8:79144794-79144795
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:78518144..78519144-chr8:79144271..79145233,9	MCF-7	breast:
2	chr8:79144521..79146483-chr8:79148036..79149918,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10101111	1.00[ASN][1000 genomes]
rs11776781	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780821	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674634	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12677810	0.86[AFR][1000 genomes]
rs13249330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275931	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13278146	0.87[ASN][1000 genomes]
rs13281350	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17407760	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1835478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978660	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34301985	0.85[ASN][1000 genomes]
rs35370736	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35583505	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35910073	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60731706	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994796	0.85[ASN][1000 genomes]
rs7004921	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010818	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs71533185	0.85[ASN][1000 genomes]
rs7839855	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79141200-79145400	Enhancers	Colon Smooth Muscle	Colon
2	chr8:79141600-79145000	Enhancers	Fetal Lung	lung
3	chr8:79142600-79145000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:79143200-79145000	Enhancers	Fetal Brain Male	brain
5	chr8:79143200-79145400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:79143400-79145200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:79143400-79145200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:79143400-79145400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:79143400-79145400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:79143800-79145000	Flanking Active TSS	Osteobl	bone
11	chr8:79144200-79145000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:79144200-79145400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:79144400-79144800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr8:79144400-79145000	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr8:79144400-79145600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:79144600-79145000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:79144600-79145000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
18	chr8:79144600-79145000	Active TSS	Brain Hippocampus Middle	brain
19	chr8:79144600-79145200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:79144600-79145400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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