Variant report

Variant	rs7004921
Chromosome Location	chr8:79141579-79141580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10101111	1.00[ASN][1000 genomes]
rs11776781	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780821	1.00[ASN][1000 genomes]
rs12674634	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13249330	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275931	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13278146	0.87[ASN][1000 genomes]
rs13281350	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17407066	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17407760	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1835478	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978660	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34301985	0.85[ASN][1000 genomes]
rs35370736	0.85[ASN][1000 genomes]
rs35583505	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35910073	1.00[ASN][1000 genomes]
rs60731706	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6994796	0.85[ASN][1000 genomes]
rs71533185	0.85[ASN][1000 genomes]
rs7839855	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79129200-79143800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:79136800-79141600	Weak transcription	Osteobl	bone
3	chr8:79137400-79141800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:79139000-79143400	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:79140800-79142800	Enhancers	Fetal Stomach	stomach
6	chr8:79141000-79141600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:79141000-79143600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:79141200-79142000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:79141200-79145400	Enhancers	Colon Smooth Muscle	Colon
10	chr8:79141400-79144200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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