Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10961339	1.00[JPT][hapmap]
rs11793835	0.81[ASN][1000 genomes]
rs12000742	0.89[EUR][1000 genomes]
rs12001739	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12003213	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12005874	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13283743	1.00[JPT][hapmap]
rs1590263	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16931170	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17193016	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17278014	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17278798	1.00[JPT][hapmap]
rs2065068	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2065069	0.90[EUR][1000 genomes]
rs35676237	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55932861	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67311478	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7018700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7023574	1.00[JPT][hapmap]
rs7025155	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7025539	0.81[ASN][1000 genomes]
rs7041670	0.81[ASN][1000 genomes]
rs72715815	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7847356	0.83[EUR][1000 genomes]
rs7869160	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13970200-13972800	Enhancers	Fetal Heart	heart
2	chr9:13970800-13976600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:13971400-13972600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:13971400-13972600	Enhancers	HUVEC	blood vessel
5	chr9:13971400-13973000	Enhancers	Fetal Kidney	kidney
6	chr9:13971600-13972600	Enhancers	Right Atrium	heart
7	chr9:13971600-13972800	Enhancers	Fetal Lung	lung
8	chr9:13971800-13972600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:13972200-13975600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:13972200-13975800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:13972400-13972600	Enhancers	Psoas Muscle	Psoas
12	chr9:13972400-13977400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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