Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10961339	0.86[JPT][hapmap]
rs11793835	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12001739	0.81[ASN][1000 genomes]
rs12003213	0.85[ASN][1000 genomes]
rs12005874	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13283743	0.86[JPT][hapmap]
rs13283809	0.83[EUR][1000 genomes]
rs1590263	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16931170	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17193016	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17278014	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17278798	0.86[JPT][hapmap]
rs2065068	0.81[ASN][1000 genomes]
rs35682517	0.85[EUR][1000 genomes]
rs55932861	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67311478	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7018700	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7023574	0.84[JPT][hapmap]
rs7025155	0.81[ASN][1000 genomes]
rs7025539	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7041670	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7855714	0.84[EUR][1000 genomes]
rs7869160	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13970800-13976600	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:13972200-13975600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:13972200-13975800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13972400-13977400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:13972800-13979600	Weak transcription	Fetal Lung	lung
6	chr9:13974400-13976400	Enhancers	HSMM	muscle
7	chr9:13974600-13976600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:13974800-13975600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:13974800-13976800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:13974800-13977400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:13975200-13976800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:13975200-13977200	Enhancers	Fetal Kidney	kidney
13	chr9:13975400-13976800	Enhancers	Osteobl	bone
14	chr9:13975400-13977000	Enhancers	HUVEC	blood vessel

Quick Search: