Variant report

Variant	rs1590263
Chromosome Location	chr9:13970315-13970316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10961339	0.86[JPT][hapmap]
rs11793835	0.89[ASN][1000 genomes]
rs12000742	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12001739	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12003213	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12005874	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13283743	0.86[JPT][hapmap]
rs13283809	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16931170	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193016	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17278014	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17278798	0.86[JPT][hapmap]
rs2065068	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2065069	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35676237	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35682517	0.85[ASN][1000 genomes]
rs55932861	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67311478	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018700	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023574	0.85[JPT][hapmap]
rs7025155	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7025539	0.89[ASN][1000 genomes]
rs7041670	0.89[ASN][1000 genomes]
rs72715815	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7847356	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7869160	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13967800-13971400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13967800-13971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:13968000-13971600	Weak transcription	Fetal Lung	lung
4	chr9:13969600-13970600	Enhancers	Psoas Muscle	Psoas
5	chr9:13969600-13970600	Enhancers	Right Atrium	heart
6	chr9:13969600-13972400	Enhancers	Left Ventricle	heart
7	chr9:13969800-13970400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr9:13969800-13970600	Enhancers	Right Ventricle	heart
9	chr9:13969800-13971000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:13970000-13970400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:13970000-13970600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:13970000-13971600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:13970200-13971400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:13970200-13972800	Enhancers	Fetal Heart	heart

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