Variant report
| Variant | rs13286083 |
|---|---|
| Chromosome Location | chr9:12890285-12890286 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12344174 | 1.00[EUR][1000 genomes] |
| rs13284880 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13295684 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13297021 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13299801 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13300480 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs13301620 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1412308 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16929764 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16929768 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16929788 | 0.87[EUR][1000 genomes] |
| rs1831561 | 0.87[EUR][1000 genomes] |
| rs34040994 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs34086294 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34297034 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs34660175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35253144 | 0.88[EUR][1000 genomes] |
| rs35313919 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35685701 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35696782 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35858006 | 0.87[EUR][1000 genomes] |
| rs36050768 | 0.87[EUR][1000 genomes] |
| rs36080084 | 0.87[EUR][1000 genomes] |
| rs36196009 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71507337 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71507342 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv498136 | chr9:12387840-12984158 | Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2422212 | chr9:12448789-13127738 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv892574 | chr9:12754969-12918226 | Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv613615 | chr9:12830070-12947238 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:12881000-12899200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr9:12881200-12891200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
