Variant report

Variant	rs34297034
Chromosome Location	chr9:12883941-12883942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:12883524..12885050-chr9:12887759..12890204,2	MCF-7	breast:
2	chr9:12776937..12779598-chr9:12883479..12885184,2	MCF-7	breast:
3	chr9:12774954..12777056-chr9:12883374..12886318,3	MCF-7	breast:
4	chr9:12774893..12776821-chr9:12883465..12885141,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153714	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12344174	0.93[EUR][1000 genomes]
rs13284880	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286083	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13295684	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297021	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13299801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13300480	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13301620	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1412308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929788	0.93[EUR][1000 genomes]
rs1831561	0.93[EUR][1000 genomes]
rs34040994	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34086294	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34660175	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35253144	0.82[EUR][1000 genomes]
rs35313919	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35685701	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35696782	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35858006	0.93[EUR][1000 genomes]
rs36050768	0.80[EUR][1000 genomes]
rs36080084	0.93[EUR][1000 genomes]
rs36196009	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71507337	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71507342	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv892574	chr9:12754969-12918226	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12875200-12884800	Weak transcription	HMEC	breast
2	chr9:12879000-12884800	Weak transcription	Liver	Liver
3	chr9:12879000-12884800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:12880000-12884200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:12880400-12884000	Enhancers	Osteobl	bone
6	chr9:12881000-12884800	Weak transcription	Fetal Kidney	kidney
7	chr9:12881000-12899200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:12881200-12884800	Weak transcription	Fetal Intestine Small	intestine
9	chr9:12881200-12891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:12881600-12884600	Weak transcription	Stomach Mucosa	stomach
11	chr9:12882000-12884000	Enhancers	Hela-S3	cervix
12	chr9:12882600-12884800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:12882600-12885400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:12882800-12884800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:12882800-12884800	Weak transcription	Adipose Nuclei	Adipose
16	chr9:12882800-12884800	Weak transcription	Fetal Lung	lung
17	chr9:12882800-12884800	Weak transcription	NH-A	brain
18	chr9:12883000-12884600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:12883000-12884800	Weak transcription	A549	lung
20	chr9:12883600-12884800	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:12883600-12884800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:12883800-12884200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:12883800-12884800	Weak transcription	NHDF-Ad	bronchial
24	chr9:12883800-12885000	Weak transcription	HSMMtube	muscle

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