Variant report

Variant	rs13297021
Chromosome Location	chr9:12874288-12874289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12344174	0.93[EUR][1000 genomes]
rs13284880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286083	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13295684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13299801	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13300480	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13301620	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1412308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929764	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929768	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929788	0.93[EUR][1000 genomes]
rs1831561	0.93[EUR][1000 genomes]
rs34040994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34086294	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34297034	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34660175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35253144	0.82[EUR][1000 genomes]
rs35313919	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35685701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35696782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35858006	0.93[EUR][1000 genomes]
rs36050768	0.80[EUR][1000 genomes]
rs36080084	0.93[EUR][1000 genomes]
rs36196009	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71507337	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71507342	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv892573	chr9:12730636-12874703	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv892574	chr9:12754969-12918226	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12863400-12874600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:12873000-12878400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:12874200-12875800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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