Variant report

Variant	rs1331081
Chromosome Location	chr20:22884908-22884909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1537133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55783247	1.00[AMR][1000 genomes]
rs55964438	1.00[AMR][1000 genomes]
rs56978650	1.00[AMR][1000 genomes]
rs57610255	1.00[AMR][1000 genomes]
rs59053572	1.00[AMR][1000 genomes]
rs6036279	1.00[AFR][1000 genomes]
rs7266993	1.00[AMR][1000 genomes]
rs73901579	1.00[AMR][1000 genomes]
rs73901582	1.00[AMR][1000 genomes]
rs73901583	1.00[AMR][1000 genomes]
rs73901586	1.00[AMR][1000 genomes]
rs73901588	1.00[AMR][1000 genomes]
rs73901589	1.00[AMR][1000 genomes]
rs73901591	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22882600-22885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:22883600-22885000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr20:22884400-22885400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr20:22884400-22887600	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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