Variant report

Variant	rs56978650
Chromosome Location	chr20:23034411-23034412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23031576..23035125-chr20:23112541..23115430,6	K562	blood:
2	chr20:23033213..23035257-chr20:23037224..23038817,2	MCF-7	breast:
3	chr20:23032271..23034692-chr20:23112541..23114516,2	K562	blood:
4	chr20:23032699..23035331-chr20:23059587..23061154,2	MCF-7	breast:
5	chr20:23027878..23030071-chr20:23034323..23036508,3	MCF-7	breast:
6	chr20:23033798..23035725-chr20:23039013..23041466,2	MCF-7	breast:
7	chr20:23031846..23034845-chr20:23202722..23206110,3	K562	blood:
8	chr20:23025358..23028275-chr20:23031819..23034490,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-8	chr20:23030380-23035547	NONHSAT079029

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1331081	1.00[AMR][1000 genomes]
rs1537133	1.00[AMR][1000 genomes]
rs55783247	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55964438	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57610255	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59053572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7266993	1.00[AMR][1000 genomes]
rs73901579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901586	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901588	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901589	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901591	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8123988	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23032600-23041800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23032800-23041400	Weak transcription	Spleen	Spleen
3	chr20:23033400-23040200	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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